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(2D+4Ch)"}],"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.4","name":"ndevio","version":"0.8.0","dynamic":null,"platform":null,"supported_platform":null,"summary":"Read, write, and manage images in napari","description":"# ndevio\n\n[![License BSD-3](https://img.shields.io/pypi/l/ndevio.svg?color=green)](https://github.com/ndev-kit/ndevio/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/ndevio.svg?color=green)](https://pypi.org/project/ndevio)\n[![Python Version](https://img.shields.io/pypi/pyversions/ndevio.svg?color=green)](https://python.org)\n[![tests](https://github.com/ndev-kit/ndevio/workflows/tests/badge.svg)](https://github.com/ndev-kit/ndevio/actions)\n[![codecov](https://codecov.io/gh/ndev-kit/ndevio/branch/main/graph/badge.svg)](https://codecov.io/gh/ndev-kit/ndevio)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/ndevio)](https://napari-hub.org/plugins/ndevio)\n[![npe2](https://img.shields.io/badge/plugin-npe2-blue?link=https://napari.org/stable/plugins/index.html)](https://napari.org/stable/plugins/index.html)\n[![Copier](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/copier-org/copier/master/img/badge/badge-grayscale-inverted-border-purple.json)](https://github.com/copier-org/copier)\n\nRead, write, and manage images in napari\n\n----------------------------------\n\nThis [napari] plugin was generated with [copier] using the [napari-plugin-template].\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/napari-plugin-template#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/stable/plugins/index.html\n-->\n\n## Installation\n\nYou can install `ndevio` via [pip]:\n\n```bash\npip install ndevio\n```\n\nIf napari is not already installed, you can install `ndevio` with napari and Qt via:\n\n```bash\npip install \"ndevio[all]\"\n```\n\nTo install the latest development version:\n\n```bash\npip install git+https://github.com/ndev-kit/ndevio.git\n```\n\n### Additional Image Format Support\n\n**ndevio** uses [bioio](https://github.com/bioio-devs/bioio) for flexible image reading. Basic formats (TIFF, OME-TIFF, OME-Zarr, PNG, etc.) are supported out of the box via:\n\n- `bioio-ome-tiff` - OME-TIFF files\n- `bioio-ome-zarr` - OME-Zarr files\n- `bioio-tifffile` - General TIFF files\n- `bioio-imageio` - PNG, JPEG, and other common formats\n\nIf your image format is not supported by the default readers, then you will get a warning and (by default in napari) a widget to install the suggested reader.\nIf you know of your additional proprietary formats, install the appropriate bioio reader.\n\n```bash\n# CZI files (GPL-3 licensed)\npip install bioio-czi\n\n# LIF files (GPL-3 licensed)\npip install bioio-lif\n\n# Bio-Formats for many formats (behavior not guaranteed)\npip install bioio-bioformats\n```\n\nSee the [bioio documentation](https://bioio-devs.github.io/bioio/) for the full list of available readers.\n\n### Pixi Usage\n\nYou can use [Pixi](https://pixi.sh) for reproducible development environments:\n\n```bash\ngit clone https://github.com/ndev-kit/ndevio.git\ncd ndevio\npixi install -e dev\npixi run -e dev test\n```\n\nOr activate the environment and run commands directly:\n\n```bash\npixi shell -e dev\npytest -v\n```\n\n### Development\n\nFor development, clone the repository and install with the dev dependency group:\n\n```bash\ngit clone https://github.com/ndev-kit/ndevio.git\ncd ndevio\npip install -e . --group dev\n```\n\nThis includes pytest, pytest-cov, pytest-qt, tox-uv, napari, and pyqt6.\n\nRun tests with:\n\n```bash\npytest -v --cov=ndevio --cov-report=html\n```\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"ndevio\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[file an issue]: https://github.com/ndev-kit/ndevio/issues\n\n[napari]: https://github.com/napari/napari\n[copier]: https://copier.readthedocs.io/en/stable/\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[napari-plugin-template]: https://github.com/napari/napari-plugin-template\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n","description_content_type":"text/markdown","keywords":null,"home_page":null,"download_url":null,"author":"Tim Monko","author_email":"timmonko@gmail.com","maintainer":null,"maintainer_email":null,"license":null,"classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.11","Programming Language :: Python :: 3.12","Programming Language :: Python :: 3.13","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["bioio-base","bioio-imageio","bioio-ome-tiff>=1.2.0","bioio-ome-zarr>=3","bioio-tifffile","bioio>=3.2.0","magic-class","magicgui","napari","napari-plugin-manager>=0.1.7","natsort","nbatch>=0.0.4","ndev-settings>=0.4.0","pooch","xarray","zarr>=3.1.3","napari[all]; extra == 'all'"],"requires_python":">=3.11","requires_external":null,"project_url":["Bug Tracker, https://github.com/ndev-kit/ndevio/issues","Documentation, https://github.com/ndev-kit/ndevio#README.md","Source Code, https://github.com/ndev-kit/ndevio","User Support, https://github.com/ndev-kit/ndevio/issues"],"provides_extra":["all"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}